Change the business model before the software
Most WebPT departures follow a business-model change: the practice is moving to cash or hybrid and no longer needs an insurance-first platform. Sequence the two changes rather than running them together.
Finish treating and billing existing in-network plans of care under the old model, or hand them cleanly to your biller, and then move the software. Switching systems part-way through a plan of care on payer patients creates audit questions that are avoidable.
The full export arrives at the end
WebPT’s documentation says data exports are generally provided upon account cancellation, and that an active clinic which is not cancelling pays a fee for one. It arrives as a link to a secure file-sharing site, with the password in a separate email; the link expires after 14 days, so download it the day it lands.
Inside the zip, per WebPT:
- Five spreadsheets: patient cases, patient demographics, payers, referring physicians, and users (PTs, PTAs and clerical staff).
- Patient documentation as PDFs: initial examinations, daily notes, flowsheets, re-examinations, progress notes and discharge summaries, filed by patient ID and date.
- Chart notes as a text file, and any external documents (eDocs).
WebPT says the export holds finalized notes and documents only. Anything left unsigned at cancellation is not in it, so close out every open note first. Its file list does not mention the appointment schedule or billing records; ask WebPT directly if you need either.
So take a working list before you cancel
The sequencing problem is that the export you would want for the migration arrives after the account closes. The way round it is a smaller pull while you still have access: in Patient Manager, Display Patients, filter to active patients, and use Export to Excel. WebPT lists the fields as names, patient ID, contact details, date of birth, primary and secondary insurance with subscriber IDs, and physician, and it advises clinics with very large patient lists not to export the whole list at once.
That spreadsheet is your client import. How it lands on this side is described once in how the import centre works. The full export at cancellation becomes the archive.
Keep what a payer audit would ask for
In-network plans of care, their authorizations and the documentation supporting units already billed matter for a reason that has nothing to do with the new system: they are what a payer audit would ask for, and audits arrive after the relationship has ended. The full export is that record. Keep it, on storage you control, regardless of what the new system ingests.
What you import is a smaller set than what you export, and that is the correct outcome. Current patients come across, with active plan-of-care parameters re-entered as structured plans; evaluations, daily notes and re-evaluations attach to each chart as history. Claims history, Medicare compliance tracking and any home-exercise program content stay with whichever tools held them.
From the cutover Monday, visits document here, minutes drive units under the payer rule configured per contract, cash patients pay by card at the visit, and the out-of-network minority takes superbills. WebPT runs until its billing tail completes and you cancel, which is when the full export arrives.
The WebPT comparison is explicit about who should not switch, Medicare-heavy clinics included. If the model is changing along with the software, physical therapy billing and the 8-minute rule cover what changes about the money.
Common questions
We still have some in-network patients, can we keep them?
Do objective measures and outcomes history transfer?
Can we get the WebPT export without cancelling first?
Document a test cash-pay visit, start to receipt
14 days, no card required. Use made-up patients while you evaluate: real patient information waits until a business associate agreement is in place.
Sources
- WebPT EMR Data Exports (WebPT Discover), generally provided on cancellation, fee for active clinics not cancelling, zip via secure file-sharing link expiring in 14 days, five CSVs plus finalized patient documents as PDFs (checked October 14, 2026)
- WebPT EMR simple patient lists (WebPT Discover), Patient Manager, Display Patients, Export to Excel, with the fields included (checked October 14, 2026)